Reproducible Research

Johns Hopkins University via Coursera

Go to Course: https://www.coursera.org/learn/reproducible-research

Introduction

### Course Review: "Reproducible Research" on Coursera In the age of data-driven decision-making, the integrity of research is paramount. Enter the course "Reproducible Research" on Coursera, which gives learners the essential principles and practical tools required to ensure that analyses not only produce valid findings but can also be verified by others. This course is an excellent investment for anyone involved in data analytics, scientific research, or related fields. #### Course Overview The "Reproducible Research" course focuses on the fundamental concept that data analyses and scientific claims must be transparent and reproducible. This means publishing not just findings but also the software code and raw data, enabling others to replicate and extend the research. With the increasing complexity of data analyses—often involving large datasets and sophisticated computational methods—understanding reproducibility has become more critical than ever for researchers and practitioners alike. #### Syllabus Breakdown 1. **Week 1: Concepts, Ideas, & Structure** - The initial week introduces learners to the foundational ideas of reproducible research. You will explore how to effectively organize and structure a data analysis project, which is key to achieving reproducibility. - The course’s flexible video structure allows for a non-linear viewing approach, making it accommodating for learners with varying schedules. 2. **Week 2: Markdown & knitr** - This week dives into essential tools for crafting reproducible documents. You will learn about "knitr," a literate programming tool, and how it integrates with Markdown to create clear, reproducible web documents. - A standout feature of this week is the first peer assessment where you will apply what you've learned by writing up your own reproducible data analysis. 3. **Week 3: Reproducible Research Checklist & Evidence-based Data Analysis** - The focus shifts to practical applications with a checklist designed to ensure that your analyses meet reproducibility standards. - While the checklist provides a foundation, it wonderfully sets the stage for deeper discussions on the importance of following robust protocols in data analysis. 4. **Week 4: Case Studies & Commentaries** - The final week incorporates real-world case studies, showcasing the critical role of reproducibility in scientific research. Observing how reproducibility directly impacts actual studies provides powerful illustrations of the course’s teachings. #### Overall Impression The "Reproducible Research" course offers a structured approach to an increasingly relevant topic in the modern research landscape. Its blend of concepts, practical applications, and peer feedback fosters an engaging learning environment. The course content is well-thought-out, and the progression feels seamless, fitting for both novices and seasoned analysts looking to refine their skills. #### Recommendation I would highly recommend the "Reproducible Research" course to anyone serious about data analytics, whether they are students, professionals, or researchers. Its emphasis on transparency and reproducibility is crucial for anyone striving to conduct responsible and verifiable science. With the skills acquired in this course, you'll be better equipped to understand and implement practices that enhance the credibility and reliability of your work. Overall, enrolling in this course is a valuable step in advancing your capabilities in data analysis and contributing meaningfully to the scientific community.

Syllabus

Week 1: Concepts, Ideas, & Structure

This week will cover the basic ideas of reproducible research since they may be unfamiliar to some of you. We also cover structuring and organizing a data analysis to help make it more reproducible. I recommend that you watch the videos in the order that they are listed on the web page, but watching the videos out of order isn't going to ruin the story.

Week 2: Markdown & knitr

This week we cover some of the core tools for developing reproducible documents. We cover the literate programming tool knitr and show how to integrate it with Markdown to publish reproducible web documents. We also introduce the first peer assessment which will require you to write up a reproducible data analysis using knitr.

Week 3: Reproducible Research Checklist & Evidence-based Data Analysis

This week covers what one could call a basic check list for ensuring that a data analysis is reproducible. While it's not absolutely sufficient to follow the check list, it provides a necessary minimum standard that would be applicable to almost any area of analysis.

Week 4: Case Studies & Commentaries

This week there are two case studies involving the importance of reproducibility in science for you to watch.

Overview

This course focuses on the concepts and tools behind reporting modern data analyses in a reproducible manner. Reproducible research is the idea that data analyses, and more generally, scientific claims, are published with their data and software code so that others may verify the findings and build upon them. The need for reproducibility is increasing dramatically as data analyses become more complex, involving larger datasets and more sophisticated computations. Reproducibility allows for peop

Skills

Knitr Data Analysis R Programming Markup Language

Reviews

This is a necessary evil. You can try to do the other classes in the specialization without it, but learning to use R markdown well is hard with out this or a similar class

Without taking this course wouldn't have fully understood the importance of reproducible research in data science. Thank you so much. I recommend this course for all data scientists.

I took this course as part of the Data Science specialization without any real expectation and realized that this subject is probably one of the most important in data analysis.

Reproducibility is one of the key elements of modern scientific method. The course was very informative and introduce ideas I did not know before, but are crucial.

I always knew documentation was important but never liked it. This course showed me just how important it was and showed me just how easy it is to do with tools like knitr.