Experimental Methods in Systems Biology

Icahn School of Medicine at Mount Sinai via Coursera

Go to Course: https://www.coursera.org/learn/experimental-methods

Introduction

# Course Review: Experimental Methods in Systems Biology ## Overview: Coursera's "Experimental Methods in Systems Biology" is an insightful course designed for learners eager to explore the technologies that fuel advancements in the field of systems biology. This course particularly emphasizes essential techniques such as RNA sequencing, mass spectrometry-based proteomics, flow and mass cytometry, and live-cell imaging. By understanding these methods, participants can gain profound insights into how cells react to controlled experimental changes, facilitating the development of detailed quantitative models of cellular functions. In the realm of modern biological research, systems biology acts as a critical pathway that propels our understanding of cellular mechanisms and interactions. Given its relevance in diverse applications—from biomedical research to drug development—this course serves as a valuable resource for anyone looking to dive into the experimental backbone of this discipline. ## Course Breakdown: ### 1. Introduction The introductory section lays the groundwork for what systems biology entails, including its significance and how experimental methods contribute to the understanding of complex biological systems. Learners will grasp the foundational concepts necessary to engage with the specific techniques covered in subsequent modules. ### 2. Deep mRNA Sequencing This module delves into deep mRNA sequencing technology, elucidating how it allows scientists to measure gene expression levels accurately. Participants will learn about the principles behind RNA-seq and its practical applications. It’s a crucial section that prepares students to interpret datasets arising from this high-throughput sequencing approach. ### 3. Mass Spectrometry-Based Proteomics Focusing on mass spectrometry, this segment highlights how researchers can analyze proteins within a biological sample. The course meticulously discusses the workflows of proteomic studies, stressing how mass spectrometry can identify and quantify proteins efficiently—skills essential for anyone wishing to focus on proteomics in their research. ### 4. Midterm Exam The midterm provides participants with the opportunity to consolidate their knowledge and gauge their understanding of the course material covered so far. It acts as a helpful checkpoint, ensuring that students are equipped with the fundamental concepts before proceeding to more specialized topics. ### 5. Flow and Mass Cytometry for Single Cell Protein Levels and Cell Fate This module introduces learners to flow and mass cytometry—advanced technologies that enable the analysis of cellular properties at a single-cell resolution. By understanding these methods, students will appreciate their role in tracing cellular behaviors and determining cell fates, which is instrumental in various fields including immunology and cancer research. ### 6. Live-cell Imaging for Single Cell Protein Dynamics Learners will explore live-cell imaging techniques that provide real-time visualization of cellular processes. This module empowers students to understand how dynamic cellular functions and protein interactions can be studied in living systems, adding depth to their analytical capabilities. ### 7. Integrating and Interpreting Datasets with Network Models and Dynamical Models Building upon previous content, this section emphasizes the importance of data integration and modeling. Participants will learn how to synthesize various experimental datasets to construct network models, allowing for a holistic understanding of cellular interactions and functions. ### 8. Final Exam The final exam serves to assess the comprehensive knowledge acquired throughout the course. It encapsulates all the learning points and ensures that participants have effectively understood and can apply the experimental methods discussed. ## Recommendation: I highly recommend the "Experimental Methods in Systems Biology" course to anyone interested in biological sciences, particularly those aiming for a career in research, biotechnology, or pharmaceuticals. This course is not only informative but also provides a practical understanding of critical technologies that are shaping the field of systems biology. Both beginners and seasoned researchers will find immense value in the knowledge shared in this course. The integration of theoretical insights with practical applications prepares students to tackle real-world challenges in biological research, making them well-equipped to contribute to advancements in the field. Enroll in this course if you’re looking to deepen your experimental knowledge and enhance your skills in systems biology—it's an investment in your professional development that can pay dividends throughout your career.

Syllabus

Introduction

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Deep mRNA Sequencing

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Mass Spectrometry-Based Proteomics

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Midterm Exam

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Flow and Mass Cytometry for Single Cell Protein Levels and Cell Fate

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Live-cell Imaging for Single Cell Protein Dynamics

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Integrating and Interpreting Datasets with Network Models and Dynamical Models

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Final Exam

Overview

Learn about the technologies underlying experimentation used in systems biology, with particular focus on RNA sequencing, mass spec-based proteomics, flow/mass cytometry and live-cell imaging. A key driver of the systems biology field is the technology allowing us to delve deeper and wider into how cells respond to experimental perturbations. This in turns allows us to build more detailed quantitative models of cellular function, which can give important insight into applications ranging from b

Skills

Reviews

Great course,\n\nRecommended if you are interest in new technologies

This course is definitely not for beginners and students must have previous lab experience (in my opinion). It is a great course to get your feet wet in new techniques that you have not performed yet.

Amazing course, only the final exam was rather an excercise in finding out out where the answers differ than trying to really understand what should be the ringht answer. I learnt a lot, thank you!

Gained meaningful insights into a new field of Systems Biology with this course.

Loved this course. Prof. Birtwistle is really into teaching and liked the way he has organized this course. Thanks!